1 SEQ_NAME: test_full_length_match_forward
2 SEQ: TCGTATGCCGTCTTCTGCTT
6 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
11 SEQ_NAME: test_begin_match_forward
12 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
16 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
21 SEQ_NAME: test_middle_match_forward
22 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
26 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
31 SEQ_NAME: test_end_match_forward
32 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
36 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
41 SEQ_NAME: test_full_length_match_forward_rc
42 SEQ: AAGCAGAAGACGGCATACGA
45 SEQ_NAME: test_begin_match_forward_rc
46 SEQ: AAGCAGAAGACGGCATACGAactacgt
52 SEQ_NAME: test_middle_match_forward_rc
53 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
59 SEQ_NAME: test_end_match_forward_rc
60 SEQ: gactgaAAGCAGAAGACGGCATACGA
63 SEQ_NAME: test_full_length_match_reverse
64 SEQ: TGACTACGACTACGACTACT
71 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
73 SEQ_NAME: test_begin_match_reverse
74 SEQ: TGACTACGACTACGACTACTactacgt
81 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
83 SEQ_NAME: test_middle_match_reverse
84 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
88 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
90 SEQ_NAME: test_end_match_reverse
91 SEQ: gactgaTGACTACGACTACGACTACT
95 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
97 SEQ_NAME: test_full_length_match_reverse_rc
98 SEQ: AGTAGTCGTAGTCGTAGTCA
101 SEQ_NAME: test_begin_match_reverse_rc
102 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
104 ADAPTOR_POS_RIGHT: 26
108 SEQ_NAME: test_middle_match_reverse_rc
109 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
111 ADAPTOR_POS_RIGHT: 35
115 SEQ_NAME: test_end_match_reverse_rc
116 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
119 SEQ_NAME: test_forward_and_reverse_match
120 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
124 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
125 ADAPTOR_POS_RIGHT: 45
126 ADAPTOR_LEN_RIGHT: 20
127 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
129 SEQ_NAME: test_forward_partial_match
130 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
134 ADAPTOR_PAT_LEFT: GTCTTCTGCTT
135 ADAPTOR_POS_RIGHT: 27
136 ADAPTOR_LEN_RIGHT: 20
137 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
139 SEQ_NAME: test_reverse_partial_match
140 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
144 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
145 ADAPTOR_POS_RIGHT: 45
146 ADAPTOR_LEN_RIGHT: 10
147 ADAPTOR_PAT_RIGHT: TGACTACGAC
149 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
150 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
152 ADAPTOR_POS_RIGHT: 71
156 SEQ_NAME: test_forward_and_reverse_match_with_insertion
157 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
159 ADAPTOR_POS_RIGHT: 67
163 SEQ_NAME: test_forward_and_reverse_match_with_deletion
164 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
166 ADAPTOR_POS_RIGHT: 75