1 SEQ_NAME: test_full_length_match_forward
2 SEQ: TCGTATGCCGTCTTCTGCTT
6 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
8 SEQ_NAME: test_begin_match_forward
9 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
13 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
15 SEQ_NAME: test_middle_match_forward
16 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
20 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
22 SEQ_NAME: test_end_match_forward
23 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
27 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
29 SEQ_NAME: test_full_length_match_forward_rc
30 SEQ: AAGCAGAAGACGGCATACGA
33 SEQ_NAME: test_begin_match_forward_rc
34 SEQ: AAGCAGAAGACGGCATACGAactacgt
37 SEQ_NAME: test_middle_match_forward_rc
38 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
41 SEQ_NAME: test_end_match_forward_rc
42 SEQ: gactgaAAGCAGAAGACGGCATACGA
45 SEQ_NAME: test_full_length_match_reverse
46 SEQ: TGACTACGACTACGACTACT
53 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
55 SEQ_NAME: test_begin_match_reverse
56 SEQ: TGACTACGACTACGACTACTactacgt
63 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
65 SEQ_NAME: test_middle_match_reverse
66 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
70 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
72 SEQ_NAME: test_end_match_reverse
73 SEQ: gactgaTGACTACGACTACGACTACT
77 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
79 SEQ_NAME: test_full_length_match_reverse_rc
80 SEQ: AGTAGTCGTAGTCGTAGTCA
83 SEQ_NAME: test_begin_match_reverse_rc
84 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
87 SEQ_NAME: test_middle_match_reverse_rc
88 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
91 SEQ_NAME: test_end_match_reverse_rc
92 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
95 SEQ_NAME: test_forward_and_reverse_match
96 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
100 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
101 ADAPTOR_POS_RIGHT: 45
102 ADAPTOR_LEN_RIGHT: 20
103 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
105 SEQ_NAME: test_forward_partial_match
106 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
110 ADAPTOR_PAT_LEFT: GTCTTCTGCTT
111 ADAPTOR_POS_RIGHT: 27
112 ADAPTOR_LEN_RIGHT: 20
113 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
115 SEQ_NAME: test_reverse_partial_match
116 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
120 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
122 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
123 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
126 SEQ_NAME: test_forward_and_reverse_match_with_insertion
127 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
130 SEQ_NAME: test_forward_and_reverse_match_with_deletion
131 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt