bp_test/out/find_adaptor.out.6

   1 SEQ_NAME: test_full_length_match_forward
   2 SEQ: TCGTATGCCGTCTTCTGCTT
   3 SEQ_LEN: 20
   4 ADAPTOR_POS_LEFT: 0
   5 ADAPTOR_LEN_LEFT: 20
   6 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
   7 ---
   8 SEQ_NAME: test_begin_match_forward
   9 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
  10 SEQ_LEN: 27
  11 ADAPTOR_POS_LEFT: 0
  12 ADAPTOR_LEN_LEFT: 20
  13 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  14 ---
  15 SEQ_NAME: test_middle_match_forward
  16 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
  17 SEQ_LEN: 36
  18 ADAPTOR_POS_LEFT: 9
  19 ADAPTOR_LEN_LEFT: 20
  20 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  21 ---
  22 SEQ_NAME: test_end_match_forward
  23 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
  24 SEQ_LEN: 26
  25 ADAPTOR_POS_LEFT: 6
  26 ADAPTOR_LEN_LEFT: 20
  27 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  28 ---
  29 SEQ_NAME: test_full_length_match_forward_rc
  30 SEQ: AAGCAGAAGACGGCATACGA
  31 SEQ_LEN: 20
  32 ---
  33 SEQ_NAME: test_begin_match_forward_rc
  34 SEQ: AAGCAGAAGACGGCATACGAactacgt
  35 SEQ_LEN: 27
  36 ---
  37 SEQ_NAME: test_middle_match_forward_rc
  38 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
  39 SEQ_LEN: 36
  40 ---
  41 SEQ_NAME: test_end_match_forward_rc
  42 SEQ: gactgaAAGCAGAAGACGGCATACGA
  43 SEQ_LEN: 26
  44 ---
  45 SEQ_NAME: test_full_length_match_reverse
  46 SEQ: TGACTACGACTACGACTACT
  47 SEQ_LEN: 20
  48 ADAPTOR_POS_LEFT: 0
  49 ADAPTOR_LEN_LEFT: 1
  50 ADAPTOR_PAT_LEFT: T
  51 ADAPTOR_POS_RIGHT: 0
  52 ADAPTOR_LEN_RIGHT: 20
  53 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  54 ---
  55 SEQ_NAME: test_begin_match_reverse
  56 SEQ: TGACTACGACTACGACTACTactacgt
  57 SEQ_LEN: 27
  58 ADAPTOR_POS_LEFT: 0
  59 ADAPTOR_LEN_LEFT: 1
  60 ADAPTOR_PAT_LEFT: T
  61 ADAPTOR_POS_RIGHT: 0
  62 ADAPTOR_LEN_RIGHT: 20
  63 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  64 ---
  65 SEQ_NAME: test_middle_match_reverse
  66 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
  67 SEQ_LEN: 36
  68 ADAPTOR_POS_RIGHT: 9
  69 ADAPTOR_LEN_RIGHT: 20
  70 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  71 ---
  72 SEQ_NAME: test_end_match_reverse
  73 SEQ: gactgaTGACTACGACTACGACTACT
  74 SEQ_LEN: 26
  75 ADAPTOR_POS_RIGHT: 6
  76 ADAPTOR_LEN_RIGHT: 20
  77 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  78 ---
  79 SEQ_NAME: test_full_length_match_reverse_rc
  80 SEQ: AGTAGTCGTAGTCGTAGTCA
  81 SEQ_LEN: 20
  82 ---
  83 SEQ_NAME: test_begin_match_reverse_rc
  84 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
  85 SEQ_LEN: 27
  86 ---
  87 SEQ_NAME: test_middle_match_reverse_rc
  88 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
  89 SEQ_LEN: 36
  90 ---
  91 SEQ_NAME: test_end_match_reverse_rc
  92 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
  93 SEQ_LEN: 26
  94 ---
  95 SEQ_NAME: test_forward_and_reverse_match
  96 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  97 SEQ_LEN: 72
  98 ADAPTOR_POS_LEFT: 9
  99 ADAPTOR_LEN_LEFT: 20
 100 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
 101 ADAPTOR_POS_RIGHT: 45
 102 ADAPTOR_LEN_RIGHT: 20
 103 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
 104 ---
 105 SEQ_NAME: test_forward_partial_match
 106 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
 107 SEQ_LEN: 54
 108 ADAPTOR_POS_LEFT: 0
 109 ADAPTOR_LEN_LEFT: 11
 110 ADAPTOR_PAT_LEFT: GTCTTCTGCTT
 111 ADAPTOR_POS_RIGHT: 27
 112 ADAPTOR_LEN_RIGHT: 20
 113 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
 114 ---
 115 SEQ_NAME: test_reverse_partial_match
 116 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
 117 SEQ_LEN: 55
 118 ADAPTOR_POS_LEFT: 9
 119 ADAPTOR_LEN_LEFT: 20
 120 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
 121 ---
 122 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
 123 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
 124 SEQ_LEN: 72
 125 ---
 126 SEQ_NAME: test_forward_and_reverse_match_with_insertion
 127 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
 128 SEQ_LEN: 68
 129 ---
 130 SEQ_NAME: test_forward_and_reverse_match_with_deletion
 131 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
 132 SEQ_LEN: 76
 133 ---