1 SEQ_NAME: test_full_length_match_forward
2 SEQ: TCGTATGCCGTCTTCTGCTT
6 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
8 SEQ_NAME: test_begin_match_forward
9 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
13 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
15 SEQ_NAME: test_middle_match_forward
16 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
20 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
22 SEQ_NAME: test_end_match_forward
23 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
27 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
29 SEQ_NAME: test_full_length_match_forward_rc
30 SEQ: AAGCAGAAGACGGCATACGA
33 SEQ_NAME: test_begin_match_forward_rc
34 SEQ: AAGCAGAAGACGGCATACGAactacgt
37 SEQ_NAME: test_middle_match_forward_rc
38 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
41 SEQ_NAME: test_end_match_forward_rc
42 SEQ: gactgaAAGCAGAAGACGGCATACGA
45 SEQ_NAME: test_full_length_match_reverse
46 SEQ: TGACTACGACTACGACTACT
50 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
52 SEQ_NAME: test_begin_match_reverse
53 SEQ: TGACTACGACTACGACTACTactacgt
57 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
59 SEQ_NAME: test_middle_match_reverse
60 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
64 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
66 SEQ_NAME: test_end_match_reverse
67 SEQ: gactgaTGACTACGACTACGACTACT
71 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
73 SEQ_NAME: test_full_length_match_reverse_rc
74 SEQ: AGTAGTCGTAGTCGTAGTCA
77 SEQ_NAME: test_begin_match_reverse_rc
78 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
81 SEQ_NAME: test_middle_match_reverse_rc
82 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
85 SEQ_NAME: test_end_match_reverse_rc
86 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
89 SEQ_NAME: test_forward_and_reverse_match
90 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
94 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
97 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
99 SEQ_NAME: test_forward_partial_match
100 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
102 ADAPTOR_POS_RIGHT: 27
103 ADAPTOR_LEN_RIGHT: 20
104 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
106 SEQ_NAME: test_reverse_partial_match
107 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
111 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
113 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
114 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
117 SEQ_NAME: test_forward_and_reverse_match_with_insertion
118 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
121 SEQ_NAME: test_forward_and_reverse_match_with_deletion
122 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt