bp_test/out/find_adaptor.out.3

   1 SEQ_NAME: test_full_length_match_forward
   2 SEQ: TCGTATGCCGTCTTCTGCTT
   3 SEQ_LEN: 20
   4 ---
   5 SEQ_NAME: test_begin_match_forward
   6 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
   7 SEQ_LEN: 27
   8 ---
   9 SEQ_NAME: test_middle_match_forward
  10 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
  11 SEQ_LEN: 36
  12 ---
  13 SEQ_NAME: test_end_match_forward
  14 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
  15 SEQ_LEN: 26
  16 ---
  17 SEQ_NAME: test_full_length_match_forward_rc
  18 SEQ: AAGCAGAAGACGGCATACGA
  19 SEQ_LEN: 20
  20 ---
  21 SEQ_NAME: test_begin_match_forward_rc
  22 SEQ: AAGCAGAAGACGGCATACGAactacgt
  23 SEQ_LEN: 27
  24 ---
  25 SEQ_NAME: test_middle_match_forward_rc
  26 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
  27 SEQ_LEN: 36
  28 ---
  29 SEQ_NAME: test_end_match_forward_rc
  30 SEQ: gactgaAAGCAGAAGACGGCATACGA
  31 SEQ_LEN: 26
  32 ---
  33 SEQ_NAME: test_full_length_match_reverse
  34 SEQ: TGACTACGACTACGACTACT
  35 SEQ_LEN: 20
  36 ADAPTOR_POS_RIGHT: 0
  37 ADAPTOR_LEN_RIGHT: 20
  38 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  39 ---
  40 SEQ_NAME: test_begin_match_reverse
  41 SEQ: TGACTACGACTACGACTACTactacgt
  42 SEQ_LEN: 27
  43 ADAPTOR_POS_RIGHT: 0
  44 ADAPTOR_LEN_RIGHT: 20
  45 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  46 ---
  47 SEQ_NAME: test_middle_match_reverse
  48 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
  49 SEQ_LEN: 36
  50 ADAPTOR_POS_RIGHT: 9
  51 ADAPTOR_LEN_RIGHT: 20
  52 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  53 ---
  54 SEQ_NAME: test_end_match_reverse
  55 SEQ: gactgaTGACTACGACTACGACTACT
  56 SEQ_LEN: 26
  57 ADAPTOR_POS_RIGHT: 6
  58 ADAPTOR_LEN_RIGHT: 20
  59 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  60 ---
  61 SEQ_NAME: test_full_length_match_reverse_rc
  62 SEQ: AGTAGTCGTAGTCGTAGTCA
  63 SEQ_LEN: 20
  64 ---
  65 SEQ_NAME: test_begin_match_reverse_rc
  66 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
  67 SEQ_LEN: 27
  68 ---
  69 SEQ_NAME: test_middle_match_reverse_rc
  70 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
  71 SEQ_LEN: 36
  72 ---
  73 SEQ_NAME: test_end_match_reverse_rc
  74 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
  75 SEQ_LEN: 26
  76 ---
  77 SEQ_NAME: test_forward_and_reverse_match
  78 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  79 SEQ_LEN: 72
  80 ADAPTOR_POS_RIGHT: 45
  81 ADAPTOR_LEN_RIGHT: 20
  82 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  83 ---
  84 SEQ_NAME: test_forward_partial_match
  85 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  86 SEQ_LEN: 54
  87 ADAPTOR_POS_RIGHT: 27
  88 ADAPTOR_LEN_RIGHT: 20
  89 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  90 ---
  91 SEQ_NAME: test_reverse_partial_match
  92 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
  93 SEQ_LEN: 55
  94 ---
  95 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
  96 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
  97 SEQ_LEN: 72
  98 ---
  99 SEQ_NAME: test_forward_and_reverse_match_with_insertion
 100 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
 101 SEQ_LEN: 68
 102 ---
 103 SEQ_NAME: test_forward_and_reverse_match_with_deletion
 104 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
 105 SEQ_LEN: 76
 106 ---