bp_test/out/find_adaptor.out.2

   1 SEQ_NAME: test_full_length_match_forward
   2 SEQ: TCGTATGCCGTCTTCTGCTT
   3 SEQ_LEN: 20
   4 ---
   5 SEQ_NAME: test_begin_match_forward
   6 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
   7 SEQ_LEN: 27
   8 ---
   9 SEQ_NAME: test_middle_match_forward
  10 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
  11 SEQ_LEN: 36
  12 ---
  13 SEQ_NAME: test_end_match_forward
  14 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
  15 SEQ_LEN: 26
  16 ---
  17 SEQ_NAME: test_full_length_match_forward_rc
  18 SEQ: AAGCAGAAGACGGCATACGA
  19 SEQ_LEN: 20
  20 ADAPTOR_POS_LEFT: 0
  21 ADAPTOR_LEN_LEFT: 20
  22 ADAPTOR_PAT_LEFT: AAGCAGAAGACGGCATACGA
  23 ---
  24 SEQ_NAME: test_begin_match_forward_rc
  25 SEQ: AAGCAGAAGACGGCATACGAactacgt
  26 SEQ_LEN: 27
  27 ADAPTOR_POS_LEFT: 0
  28 ADAPTOR_LEN_LEFT: 20
  29 ADAPTOR_PAT_LEFT: AAGCAGAAGACGGCATACGA
  30 ---
  31 SEQ_NAME: test_middle_match_forward_rc
  32 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
  33 SEQ_LEN: 36
  34 ADAPTOR_POS_LEFT: 9
  35 ADAPTOR_LEN_LEFT: 20
  36 ADAPTOR_PAT_LEFT: AAGCAGAAGACGGCATACGA
  37 ---
  38 SEQ_NAME: test_end_match_forward_rc
  39 SEQ: gactgaAAGCAGAAGACGGCATACGA
  40 SEQ_LEN: 26
  41 ADAPTOR_POS_LEFT: 6
  42 ADAPTOR_LEN_LEFT: 20
  43 ADAPTOR_PAT_LEFT: AAGCAGAAGACGGCATACGA
  44 ---
  45 SEQ_NAME: test_full_length_match_reverse
  46 SEQ: TGACTACGACTACGACTACT
  47 SEQ_LEN: 20
  48 ---
  49 SEQ_NAME: test_begin_match_reverse
  50 SEQ: TGACTACGACTACGACTACTactacgt
  51 SEQ_LEN: 27
  52 ---
  53 SEQ_NAME: test_middle_match_reverse
  54 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
  55 SEQ_LEN: 36
  56 ---
  57 SEQ_NAME: test_end_match_reverse
  58 SEQ: gactgaTGACTACGACTACGACTACT
  59 SEQ_LEN: 26
  60 ---
  61 SEQ_NAME: test_full_length_match_reverse_rc
  62 SEQ: AGTAGTCGTAGTCGTAGTCA
  63 SEQ_LEN: 20
  64 ---
  65 SEQ_NAME: test_begin_match_reverse_rc
  66 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
  67 SEQ_LEN: 27
  68 ---
  69 SEQ_NAME: test_middle_match_reverse_rc
  70 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
  71 SEQ_LEN: 36
  72 ---
  73 SEQ_NAME: test_end_match_reverse_rc
  74 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
  75 SEQ_LEN: 26
  76 ---
  77 SEQ_NAME: test_forward_and_reverse_match
  78 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  79 SEQ_LEN: 72
  80 ---
  81 SEQ_NAME: test_forward_partial_match
  82 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  83 SEQ_LEN: 54
  84 ---
  85 SEQ_NAME: test_reverse_partial_match
  86 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
  87 SEQ_LEN: 55
  88 ---
  89 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
  90 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
  91 SEQ_LEN: 72
  92 ---
  93 SEQ_NAME: test_forward_and_reverse_match_with_insertion
  94 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
  95 SEQ_LEN: 68
  96 ---
  97 SEQ_NAME: test_forward_and_reverse_match_with_deletion
  98 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
  99 SEQ_LEN: 76
 100 ---