bp_test/out/find_adaptor.out.10

   1 SEQ_NAME: test_full_length_match_forward
   2 SEQ: TCGTATGCCGTCTTCTGCTT
   3 SEQ_LEN: 20
   4 ADAPTOR_POS_LEFT: 0
   5 ADAPTOR_LEN_LEFT: 20
   6 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
   7 ---
   8 SEQ_NAME: test_begin_match_forward
   9 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
  10 SEQ_LEN: 27
  11 ADAPTOR_POS_LEFT: 0
  12 ADAPTOR_LEN_LEFT: 20
  13 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  14 ---
  15 SEQ_NAME: test_middle_match_forward
  16 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
  17 SEQ_LEN: 36
  18 ADAPTOR_POS_LEFT: 7
  19 ADAPTOR_LEN_LEFT: 22
  20 ADAPTOR_PAT_LEFT: gaTCGTATGCCGTCTTCTGCTT
  21 ---
  22 SEQ_NAME: test_end_match_forward
  23 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
  24 SEQ_LEN: 26
  25 ADAPTOR_POS_LEFT: 4
  26 ADAPTOR_LEN_LEFT: 22
  27 ADAPTOR_PAT_LEFT: gaTCGTATGCCGTCTTCTGCTT
  28 ---
  29 SEQ_NAME: test_full_length_match_forward_rc
  30 SEQ: AAGCAGAAGACGGCATACGA
  31 SEQ_LEN: 20
  32 ---
  33 SEQ_NAME: test_begin_match_forward_rc
  34 SEQ: AAGCAGAAGACGGCATACGAactacgt
  35 SEQ_LEN: 27
  36 ---
  37 SEQ_NAME: test_middle_match_forward_rc
  38 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
  39 SEQ_LEN: 36
  40 ---
  41 SEQ_NAME: test_end_match_forward_rc
  42 SEQ: gactgaAAGCAGAAGACGGCATACGA
  43 SEQ_LEN: 26
  44 ---
  45 SEQ_NAME: test_full_length_match_reverse
  46 SEQ: TGACTACGACTACGACTACT
  47 SEQ_LEN: 20
  48 ADAPTOR_POS_RIGHT: 0
  49 ADAPTOR_LEN_RIGHT: 20
  50 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  51 ---
  52 SEQ_NAME: test_begin_match_reverse
  53 SEQ: TGACTACGACTACGACTACTactacgt
  54 SEQ_LEN: 27
  55 ADAPTOR_POS_RIGHT: 0
  56 ADAPTOR_LEN_RIGHT: 20
  57 ADAPTOR_PAT_RIGHT: TGACTACGACTACGACTACT
  58 ---
  59 SEQ_NAME: test_middle_match_reverse
  60 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
  61 SEQ_LEN: 36
  62 ADAPTOR_POS_RIGHT: 7
  63 ADAPTOR_LEN_RIGHT: 22
  64 ADAPTOR_PAT_RIGHT: gaTGACTACGACTACGACTACT
  65 ---
  66 SEQ_NAME: test_end_match_reverse
  67 SEQ: gactgaTGACTACGACTACGACTACT
  68 SEQ_LEN: 26
  69 ADAPTOR_POS_RIGHT: 4
  70 ADAPTOR_LEN_RIGHT: 22
  71 ADAPTOR_PAT_RIGHT: gaTGACTACGACTACGACTACT
  72 ---
  73 SEQ_NAME: test_full_length_match_reverse_rc
  74 SEQ: AGTAGTCGTAGTCGTAGTCA
  75 SEQ_LEN: 20
  76 ---
  77 SEQ_NAME: test_begin_match_reverse_rc
  78 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
  79 SEQ_LEN: 27
  80 ---
  81 SEQ_NAME: test_middle_match_reverse_rc
  82 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
  83 SEQ_LEN: 36
  84 ---
  85 SEQ_NAME: test_end_match_reverse_rc
  86 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
  87 SEQ_LEN: 26
  88 ---
  89 SEQ_NAME: test_forward_and_reverse_match
  90 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  91 SEQ_LEN: 72
  92 ADAPTOR_POS_LEFT: 7
  93 ADAPTOR_LEN_LEFT: 22
  94 ADAPTOR_PAT_LEFT: gaTCGTATGCCGTCTTCTGCTT
  95 ADAPTOR_POS_RIGHT: 43
  96 ADAPTOR_LEN_RIGHT: 22
  97 ADAPTOR_PAT_RIGHT: gaTGACTACGACTACGACTACT
  98 ---
  99 SEQ_NAME: test_forward_partial_match
 100 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
 101 SEQ_LEN: 54
 102 ADAPTOR_POS_RIGHT: 25
 103 ADAPTOR_LEN_RIGHT: 22
 104 ADAPTOR_PAT_RIGHT: gaTGACTACGACTACGACTACT
 105 ---
 106 SEQ_NAME: test_reverse_partial_match
 107 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
 108 SEQ_LEN: 55
 109 ADAPTOR_POS_LEFT: 7
 110 ADAPTOR_LEN_LEFT: 22
 111 ADAPTOR_PAT_LEFT: gaTCGTATGCCGTCTTCTGCTT
 112 ---
 113 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
 114 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
 115 SEQ_LEN: 72
 116 ---
 117 SEQ_NAME: test_forward_and_reverse_match_with_insertion
 118 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
 119 SEQ_LEN: 68
 120 ---
 121 SEQ_NAME: test_forward_and_reverse_match_with_deletion
 122 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
 123 SEQ_LEN: 76
 124 ADAPTOR_POS_LEFT: 9
 125 ADAPTOR_LEN_LEFT: 22
 126 ADAPTOR_PAT_LEFT: TCGTATGaaCCGTCTTCTGCTT
 127 ADAPTOR_POS_RIGHT: 47
 128 ADAPTOR_LEN_RIGHT: 22
 129 ADAPTOR_PAT_RIGHT: TGACTACGACTAaaCGACTACT
 130 ---