bp_test/out/find_adaptor.out.1

   1 SEQ_NAME: test_full_length_match_forward
   2 SEQ: TCGTATGCCGTCTTCTGCTT
   3 SEQ_LEN: 20
   4 ADAPTOR_POS_LEFT: 0
   5 ADAPTOR_LEN_LEFT: 20
   6 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
   7 ---
   8 SEQ_NAME: test_begin_match_forward
   9 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
  10 SEQ_LEN: 27
  11 ADAPTOR_POS_LEFT: 0
  12 ADAPTOR_LEN_LEFT: 20
  13 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  14 ---
  15 SEQ_NAME: test_middle_match_forward
  16 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
  17 SEQ_LEN: 36
  18 ADAPTOR_POS_LEFT: 9
  19 ADAPTOR_LEN_LEFT: 20
  20 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  21 ---
  22 SEQ_NAME: test_end_match_forward
  23 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
  24 SEQ_LEN: 26
  25 ADAPTOR_POS_LEFT: 6
  26 ADAPTOR_LEN_LEFT: 20
  27 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  28 ---
  29 SEQ_NAME: test_full_length_match_forward_rc
  30 SEQ: AAGCAGAAGACGGCATACGA
  31 SEQ_LEN: 20
  32 ---
  33 SEQ_NAME: test_begin_match_forward_rc
  34 SEQ: AAGCAGAAGACGGCATACGAactacgt
  35 SEQ_LEN: 27
  36 ---
  37 SEQ_NAME: test_middle_match_forward_rc
  38 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
  39 SEQ_LEN: 36
  40 ---
  41 SEQ_NAME: test_end_match_forward_rc
  42 SEQ: gactgaAAGCAGAAGACGGCATACGA
  43 SEQ_LEN: 26
  44 ---
  45 SEQ_NAME: test_full_length_match_reverse
  46 SEQ: TGACTACGACTACGACTACT
  47 SEQ_LEN: 20
  48 ---
  49 SEQ_NAME: test_begin_match_reverse
  50 SEQ: TGACTACGACTACGACTACTactacgt
  51 SEQ_LEN: 27
  52 ---
  53 SEQ_NAME: test_middle_match_reverse
  54 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
  55 SEQ_LEN: 36
  56 ---
  57 SEQ_NAME: test_end_match_reverse
  58 SEQ: gactgaTGACTACGACTACGACTACT
  59 SEQ_LEN: 26
  60 ---
  61 SEQ_NAME: test_full_length_match_reverse_rc
  62 SEQ: AGTAGTCGTAGTCGTAGTCA
  63 SEQ_LEN: 20
  64 ---
  65 SEQ_NAME: test_begin_match_reverse_rc
  66 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
  67 SEQ_LEN: 27
  68 ---
  69 SEQ_NAME: test_middle_match_reverse_rc
  70 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
  71 SEQ_LEN: 36
  72 ---
  73 SEQ_NAME: test_end_match_reverse_rc
  74 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
  75 SEQ_LEN: 26
  76 ---
  77 SEQ_NAME: test_forward_and_reverse_match
  78 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  79 SEQ_LEN: 72
  80 ADAPTOR_POS_LEFT: 9
  81 ADAPTOR_LEN_LEFT: 20
  82 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  83 ---
  84 SEQ_NAME: test_forward_partial_match
  85 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  86 SEQ_LEN: 54
  87 ---
  88 SEQ_NAME: test_reverse_partial_match
  89 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
  90 SEQ_LEN: 55
  91 ADAPTOR_POS_LEFT: 9
  92 ADAPTOR_LEN_LEFT: 20
  93 ADAPTOR_PAT_LEFT: TCGTATGCCGTCTTCTGCTT
  94 ---
  95 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
  96 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
  97 SEQ_LEN: 72
  98 ---
  99 SEQ_NAME: test_forward_and_reverse_match_with_insertion
 100 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
 101 SEQ_LEN: 68
 102 ---
 103 SEQ_NAME: test_forward_and_reverse_match_with_deletion
 104 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
 105 SEQ_LEN: 76
 106 ---