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refactoring of assemble_pairs
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1 SEQ: MLSEKYDLVIVGRGAAAFSAAIRASEITSGQARIAMVGNGPLGGTCVNTGCVPSKLLISISNSFQNSLKPRYPGLPSVERPPETEVIMDFIRESVHGERKKKYEDVVESYENIDLYTGTAVFTGEKEILVDSSHSLFGYNVLIATGSRPYVPGIKGLNETSYITTDSVWELKHVPASIAILGGGAVGVEIGQALSRLGSEVHIIEVSNQILPGIPADMASIIERSLREDGMVINTSTSVDEVSGGEGKKYLKLNGTNINDTLEVEEILVATGRAPNIDLALEKTGVKYSKRGIAVDEYLRTSNRKIYAAGDVVDQKYKLETLAAREGFISAENMFNHAMRTIDIFNVPFAVFCSPGYASVGYTQDEATKAGIKTEARRISTKDVASERIHANREGIINIVAEADTKEIVGVQIVAENAPELINEASAILSKRFKTDDLINTVHVFPTENEGLKLATQSFSRDITMMSCCME
2 SEQ_NAME: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
3 SEQ_LEN: 471
4 ---
5 STRAND: +
6 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
7 ALIGN_LEN: 471
8 S_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
9 REC_TYPE: BLAST
10 IDENT: 100.00
11 E_VAL: 0.0
12 S_BEG: 0
13 Q_BEG: 0
14 MISMATCHES: 0
15 BIT_SCORE: 961
16 Q_END: 470
17 GAPS: 0
18 S_END: 470
19 ---
20 STRAND: +
21 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
22 ALIGN_LEN: 470
23 S_ID: gi_16082328_mercuric_reductase_[Thermoplasma_acidophilum_DSM_1728]
24 REC_TYPE: BLAST
25 IDENT: 58.94
26 E_VAL: 3e-157
27 S_BEG: 0
28 Q_BEG: 1
29 MISMATCHES: 192
30 BIT_SCORE: 540
31 Q_END: 470
32 GAPS: 1
33 S_END: 468
34 ---
35 STRAND: +
36 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
37 ALIGN_LEN: 468
38 S_ID: gi_15899410_mercuric_reductase_(Hg(II)_reductase)_(merA)_[Sulfolobus_solfataricus_P2]
39 REC_TYPE: BLAST
40 IDENT: 40.17
41 E_VAL: 2e-83
42 S_BEG: 2
43 Q_BEG: 6
44 MISMATCHES: 259
45 BIT_SCORE: 295
46 Q_END: 469
47 GAPS: 9
48 S_END: 452
49 ---
50 STRAND: +
51 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
52 ALIGN_LEN: 473
53 S_ID: gi_15921327_mercuric_reductase_[Sulfolobus_tokodaii_str._7]
54 REC_TYPE: BLAST
55 IDENT: 39.11
56 E_VAL: 6e-78
57 S_BEG: 5
58 Q_BEG: 7
59 MISMATCHES: 257
60 BIT_SCORE: 277
61 Q_END: 470
62 GAPS: 11
63 S_END: 455
64 ---
65 STRAND: +
66 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
67 ALIGN_LEN: 474
68 S_ID: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R]
69 REC_TYPE: BLAST
70 IDENT: 35.65
71 E_VAL: 6e-72
72 S_BEG: 82
73 Q_BEG: 3
74 MISMATCHES: 285
75 BIT_SCORE: 257
76 Q_END: 468
77 GAPS: 12
78 S_END: 543
79 ---
80 STRAND: +
81 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
82 ALIGN_LEN: 34
83 S_ID: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R]
84 REC_TYPE: BLAST
85 IDENT: 38.24
86 E_VAL: 3.2
87 S_BEG: 10
88 Q_BEG: 267
89 MISMATCHES: 17
90 BIT_SCORE: 19.2
91 Q_END: 296
92 GAPS: 1
93 S_END: 43
94 ---
95 STRAND: +
96 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
97 ALIGN_LEN: 470
98 S_ID: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R]
99 REC_TYPE: BLAST
100 IDENT: 34.68
101 E_VAL: 6e-72
102 S_BEG: 82
103 Q_BEG: 3
104 MISMATCHES: 295
105 BIT_SCORE: 257
106 Q_END: 468
107 GAPS: 9
108 S_END: 543
109 ---
110 STRAND: +
111 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
112 ALIGN_LEN: 34
113 S_ID: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R]
114 REC_TYPE: BLAST
115 IDENT: 38.24
116 E_VAL: 3.3
117 S_BEG: 10
118 Q_BEG: 267
119 MISMATCHES: 17
120 BIT_SCORE: 19.2
121 Q_END: 296
122 GAPS: 1
123 S_END: 43
124 ---
125 STRAND: +
126 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
127 ALIGN_LEN: 480
128 S_ID: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1]
129 REC_TYPE: BLAST
130 IDENT: 33.33
131 E_VAL: 2e-61
132 S_BEG: 0
133 Q_BEG: 0
134 MISMATCHES: 290
135 BIT_SCORE: 222
136 Q_END: 469
137 GAPS: 13
138 S_END: 459
139 ---
140 STRAND: +
141 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
142 ALIGN_LEN: 451
143 S_ID: gi_18466613_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18]
144 REC_TYPE: BLAST
145 IDENT: 33.26
146 E_VAL: 2e-60
147 S_BEG: 120
148 Q_BEG: 31
149 MISMATCHES: 279
150 BIT_SCORE: 219
151 Q_END: 468
152 GAPS: 11
153 S_END: 561
154 ---
155 STRAND: +
156 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
157 ALIGN_LEN: 447
158 S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18]
159 REC_TYPE: BLAST
160 IDENT: 32.66
161 E_VAL: 8e-58
162 S_BEG: 121
163 Q_BEG: 31
164 MISMATCHES: 283
165 BIT_SCORE: 210
166 Q_END: 468
167 GAPS: 10
168 S_END: 558
169 ---
170 STRAND: +
171 Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1]
172 ALIGN_LEN: 456
173 S_ID: gi_18313475_mercuric_reductase_[Pyrobaculum_aerophilum_str._IM2]
174 REC_TYPE: BLAST
175 IDENT: 33.11
176 E_VAL: 2e-57
177 S_BEG: 24
178 Q_BEG: 31
179 MISMATCHES: 272
180 BIT_SCORE: 209
181 Q_END: 468
182 GAPS: 13
183 S_END: 464
184 ---