bp_test/in/find_adaptor.in

   1 SEQ_NAME: test_full_length_match_forward
   2 SEQ: TCGTATGCCGTCTTCTGCTT
   3 SEQ_LEN: 20
   4 ---
   5 SEQ_NAME: test_begin_match_forward
   6 SEQ: TCGTATGCCGTCTTCTGCTTactacgt
   7 SEQ_LEN: 27
   8 ---
   9 SEQ_NAME: test_middle_match_forward
  10 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
  11 SEQ_LEN: 36
  12 ---
  13 SEQ_NAME: test_end_match_forward
  14 SEQ: gactgaTCGTATGCCGTCTTCTGCTT
  15 SEQ_LEN: 26
  16 ---
  17 SEQ_NAME: test_full_length_match_forward_rc
  18 SEQ: AAGCAGAAGACGGCATACGA
  19 SEQ_LEN: 20
  20 ---
  21 SEQ_NAME: test_begin_match_forward_rc
  22 SEQ: AAGCAGAAGACGGCATACGAactacgt
  23 SEQ_LEN: 27
  24 ---
  25 SEQ_NAME: test_middle_match_forward_rc
  26 SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
  27 SEQ_LEN: 36
  28 ---
  29 SEQ_NAME: test_end_match_forward_rc
  30 SEQ: gactgaAAGCAGAAGACGGCATACGA
  31 SEQ_LEN: 26
  32 ---
  33 SEQ_NAME: test_full_length_match_reverse
  34 SEQ: TGACTACGACTACGACTACT
  35 SEQ_LEN: 20
  36 ---
  37 SEQ_NAME: test_begin_match_reverse
  38 SEQ: TGACTACGACTACGACTACTactacgt
  39 SEQ_LEN: 27
  40 ---
  41 SEQ_NAME: test_middle_match_reverse
  42 SEQ: actgactgaTGACTACGACTACGACTACTactacgt
  43 SEQ_LEN: 36
  44 ---
  45 SEQ_NAME: test_end_match_reverse
  46 SEQ: gactgaTGACTACGACTACGACTACT
  47 SEQ_LEN: 26
  48 ---
  49 SEQ_NAME: test_full_length_match_reverse_rc
  50 SEQ: AGTAGTCGTAGTCGTAGTCA
  51 SEQ_LEN: 20
  52 ---
  53 SEQ_NAME: test_begin_match_reverse_rc
  54 SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
  55 SEQ_LEN: 27
  56 ---
  57 SEQ_NAME: test_middle_match_reverse_rc
  58 SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
  59 SEQ_LEN: 36
  60 ---
  61 SEQ_NAME: test_end_match_reverse_rc
  62 SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
  63 SEQ_LEN: 26
  64 ---
  65 SEQ_NAME: test_forward_and_reverse_match
  66 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  67 SEQ_LEN: 72
  68 ---
  69 SEQ_NAME: test_forward_partial_match
  70 SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
  71 SEQ_LEN: 54
  72 ---
  73 SEQ_NAME: test_reverse_partial_match
  74 SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
  75 SEQ_LEN: 55
  76 ---
  77 SEQ_NAME: test_forward_and_reverse_match_with_mismatch
  78 SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
  79 SEQ_LEN: 72
  80 ---
  81 SEQ_NAME: test_forward_and_reverse_match_with_insertion
  82 SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
  83 SEQ_LEN: 68
  84 ---
  85 SEQ_NAME: test_forward_and_reverse_match_with_deletion
  86 SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
  87 SEQ_LEN: 76
  88 ---