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3 ### Stuff that enables Biopieces.
5 ### BP_DIR, BP_DATA, BP_TMP, and BP_LOG should all be set in ~/.bashrc
6 ### see http://code.google.com/p/biopieces/wiki/Installation
8 ### The below bin directory should hold biopiece executables - regardsles of programming language.
10 export BP_BIN="$BP_DIR/bp_bin" # Directory with biopiece executables.
12 ### The following directories hold the biopiece libraries, modules, gems, etc - one per programming language.
14 export BP_PERL="$BP_DIR/code_perl" # Direcotory with Perl code.
15 export BP_C="$BP_DIR/code_c" # Direcotory with C code.
16 export BP_PYTHON="$BP_DIR/code_python" # Direcotory with Pyton code.
17 export BP_RUBY="$BP_DIR/code_ruby" # Direcotory with Ruby code.
19 ### This is the directory with the document root fro the Biopieces Genome Browser:
21 export BP_WWW="$BP_DIR/www" # Direcotory with Biopieces Genome Browser.
23 ### Here we add the biopiece variable to the existing PATH.
25 export PATH="$PATH:$BP_BIN"
27 ### Here we add the Biopieces Perl modules to PERL5LIB.
29 export PERL5LIB="$PERL5LIB:$BP_PERL"
31 ### Here we add the Biopieces Ruby libraries to RUBYLIB.
33 export RUBYLIB="$RUBYLIB:$BP_RUBY/Maasha/lib"
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38 ### Martin A. Hansen, June 2008