1 # >>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<
4 # Stuff that enables biotools.
6 export TOOLS_DIR="/Users/m.hansen/tools" # Contains binaries for BLAST and Vmatch.
7 export INST_DIR="/Users/m.hansen/maasha" # Contains scripts and modules.
8 export DATA_DIR="/Users/m.hansen/DATA" # Contains genomic data etc.
9 export TMP_DIR="/Users/m.hansen/maasha/tmp" # Required temporary directory.
10 export LOG_DIR="/Users/m.hansen/maasha/log" # Log directory
12 export PATH="$PATH:$TOOLS_DIR/blast-2.2.17/bin:$TOOLS_DIR/vmatch.distribution"
13 export PATH="$INST_DIR/bin/:$INST_DIR/perl/bin:$INST_DIR/perl_scripts/:$INST_DIR/biotools:$PATH"
14 export PERL5LIB="$PERL5LIB:$INST_DIR/perl_modules"
16 # Alias allowing power scripting with biotools
18 alias bioscript="perl -MMaasha::Biotools=read_stream,get_record,put_record -e"
21 # >>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<