2 CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
3 DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
4 LOBJS= bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o
6 AOBJS= call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o $(OMISC)/bedidx.o
14 $(CC) -c $(CFLAGS) $(DFLAGS) -I.. $(INCLUDES) $< -o $@
16 all-recur lib-recur clean-recur cleanlocal-recur install-recur:
17 @target=`echo $@ | sed s/-recur//`; \
19 list='$(SUBDIRS)'; for subdir in $$list; do \
21 $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
22 INCLUDES="$(INCLUDES)" LIBPATH="$(LIBPATH)" $$target || exit 1; \
31 $(AR) -csru $@ $(LOBJS)
34 $(CC) $(CFLAGS) -o $@ $(AOBJS) -L. $(LIBPATH) -lbcf -lm -lz -lpthread
49 rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a bcf.aux bcf.log bcf.pdf *.class libbcf.*.dylib libbcf.so*
51 clean:cleanlocal-recur