1 // ***************************************************************************
2 // bamtools_filter.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 2 June 2010
7 // ---------------------------------------------------------------------------
8 // Filters a single BAM file (or filters multiple BAM files and merges)
9 // according to some user-specified criteria.
10 // ***************************************************************************
12 #ifndef BAMTOOLS_FILTER_H
13 #define BAMTOOLS_FILTER_H
15 #include "bamtools_tool.h"
19 class FilterTool : public AbstractTool {
27 int Run(int argc, char* argv[]);
30 struct FilterSettings;
31 FilterSettings* m_settings;
34 } // namespace BamTools
36 #endif // BAMTOOLS_FILTER_H