1 // ***************************************************************************
2 // bamtools_count.h (c) 2010 Derek Barnett, Erik Garrison
3 // Marth Lab, Department of Biology, Boston College
4 // All rights reserved.
5 // ---------------------------------------------------------------------------
6 // Last modified: 1 June 2010
7 // ---------------------------------------------------------------------------
8 // Prints alignment count for BAM file
10 // ** Expand to multiple??
12 // ***************************************************************************
14 #ifndef BAMTOOLS_COUNT_H
15 #define BAMTOOLS_COUNT_H
17 #include "bamtools_tool.h"
21 class CountTool : public AbstractTool {
29 int Run(int argc, char* argv[]);
33 CountSettings* m_settings;
36 } // namespace BamTools
38 #endif // BAMTOOLS_COUNT_H