8 * Created by Pat Schloss on 10/11/11.
9 * Copyright 2011 Patrick D. Schloss. All rights reserved.
13 #include "taxonomynode.h"
15 /**************************************************************************************************/
18 thetaAlign() : A(0), T(0), G(0), C(0), gap(0){}
26 /**************************************************************************************************/
28 class AlignNode : public TaxonomyNode {
31 AlignNode(string, int);
32 int loadSequence(string&);
35 double getPxGivenkj_D_j(string& query); //P(x | k_j, D, j)
36 double getSimToConsensus(string& query);
37 vector<thetaAlign> getTheta() { return theta; }
38 int addThetas(vector<thetaAlign>, int);
41 vector<thetaAlign> theta;
42 vector<unsigned int> columnCounts;
46 /**************************************************************************************************/