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726 37D928020F21331F001D4494 /* rarecalc.h */,
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800 378DC5CE0FBDE1C8003B8607 /* aligncommand.cpp */,
801 37C1D9710F86506E0059E3F0 /* binsequencecommand.h */,
802 37C1D9720F86506E0059E3F0 /* binsequencecommand.cpp */,
803 21DDC0190F97A8FE0060691C /* bootstrapsharedcommand.h */,
804 21DDC01A0F97A8FE0060691C /* bootstrapsharedcommand.cpp */,
805 37D927C40F21331F001D4494 /* clustercommand.h */,
806 37D927C30F21331F001D4494 /* clustercommand.cpp */,
807 37D927C80F21331F001D4494 /* collectcommand.h */,
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811 377326640FAF16E0007ABB8B /* consensuscommand.h */,
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817 37C753CC0FB3415200DBD02E /* distancecommand.h */,
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833 37B73CA41004D89A008C4B41 /* getseqscommand.h */,
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841 375873F40F7D648F0040F377 /* libshuffcommand.h */,
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843 37B73C741004BEFD008C4B41 /* listseqscommand.h */,
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851 3792946E0F2E191800B9034A /* parsimonycommand.h */,
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861 372E126E0F26365B0095CF7E /* readotucommand.h */,
862 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
863 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
864 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
865 37B73CBE1004EB38008C4B41 /* removeseqscommand.h */,
866 37B73CBF1004EB38008C4B41 /* removeseqscommand.cpp */,
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868 7E09C5130FDA79C5002ECAE5 /* reversecommand.cpp */,
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870 371B30B20FD7EE67000414CA /* screenseqscommand.cpp */,
871 3799A94F0FD6A58C00E33EDE /* seqsummarycommand.h */,
872 3799A94E0FD6A58C00E33EDE /* seqsummarycommand.cpp */,
873 37D928270F21331F001D4494 /* sharedcommand.h */,
874 37D928260F21331F001D4494 /* sharedcommand.cpp */,
875 37D928470F21331F001D4494 /* summarycommand.h */,
876 37D928460F21331F001D4494 /* summarycommand.cpp */,
877 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
878 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
879 37B73CCD1004F5E0008C4B41 /* systemcommand.h */,
880 37B73CCE1004F5E0008C4B41 /* systemcommand.cpp */,
881 211C38370F961E1F00FEE541 /* treegroupscommand.h */,
882 211C38360F961E1F00FEE541 /* treegroupscommand.cpp */,
883 7E09C5340FDA7F65002ECAE5 /* trimseqscommand.h */,
884 7E09C5350FDA7F65002ECAE5 /* trimseqscommand.cpp */,
885 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
886 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
887 374610760F40645300460C57 /* unifracweightedcommand.h */,
888 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
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899 373C68A00FC1C07D00137ACD /* alignment.cpp */,
900 373C68A30FC1C07D00137ACD /* alignmentcell.hpp */,
901 373C68A20FC1C07D00137ACD /* alignmentcell.cpp */,
902 373C69170FC1C8AF00137ACD /* blastdb.hpp */,
903 373C69160FC1C8AF00137ACD /* blastdb.cpp */,
904 37D927D40F21331F001D4494 /* database.hpp */,
905 37D927D30F21331F001D4494 /* database.cpp */,
906 37D927D50F21331F001D4494 /* datavector.hpp */,
907 3799A94D0FD6A58C00E33EDE /* distancedb.hpp */,
908 3799A94C0FD6A58C00E33EDE /* distancedb.cpp */,
909 37D927DC0F21331F001D4494 /* fastamap.h */,
910 37D927DB0F21331F001D4494 /* fastamap.cpp */,
911 375873EA0F7D64520040F377 /* fullmatrix.h */,
912 375873EB0F7D64520040F377 /* fullmatrix.cpp */,
913 37D927E20F21331F001D4494 /* groupmap.h */,
914 37D927E10F21331F001D4494 /* groupmap.cpp */,
915 37D927EA0F21331F001D4494 /* kmer.hpp */,
916 37D927E90F21331F001D4494 /* kmer.cpp */,
917 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
918 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
919 37D927EE0F21331F001D4494 /* listvector.hpp */,
920 37D927ED0F21331F001D4494 /* listvector.cpp */,
921 37D927F80F21331F001D4494 /* ordervector.hpp */,
922 37D927F70F21331F001D4494 /* ordervector.cpp */,
923 37D928000F21331F001D4494 /* rabundvector.hpp */,
924 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
925 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
926 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
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930 378C1AFD0FB0644D004D63F5 /* sequencedb.cpp */,
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