Makefile

   1 CXX=            g++\r
   2 CXXFLAGS=       -Wall -O3 -D_FILE_OFFSET_BITS=64\r
   3 PROG=           bamtools\r
   4 API=            BGZF.o \
   5                 BamIndex.o \
   6                 BamReader.o \
   7                 BamWriter.o \
   8                 BamMultiReader.o
   9 UTILS=          bamtools_options.o \
  10                 bamtools_utilities.o
  11 TOOLKIT=        bamtools_convert.o \
  12                 bamtools_count.o \
  13                 bamtools_coverage.o \
  14                 bamtools_filter.o \
  15                 bamtools_header.o \
  16                 bamtools_index.o \
  17                 bamtools_merge.o \
  18                 bamtools_sam.o \
  19                 bamtools_sort.o \
  20                 bamtools_stats.o
  21 MAIN=           bamtools.o
  22 OBJS=           $(API) $(UTILS) $(TOOLKIT) $(MAIN)
  23 LIBS=           -lz
  24 \r
  25 all: $(PROG)\r
  26 \r
  27 bamtools: $(OBJS)\r
  28         $(CXX) $(CXXFLAGS) -o $@ $(OBJS) $(LIBS)
  29 \r
  30 clean:\r
  31         rm -fr gmon.out *.o *.a a.out *~\r