Makefile

   1 CXX=            g++\r
   2 CXXFLAGS=       -Wall -O3 -D_FILE_OFFSET_BITS=64\r
   3 PROG=           bamtools\r
   4 API=            BGZF.o \
   5                 BamIndex.o \
   6                 BamReader.o \
   7                 BamWriter.o \
   8                 BamMultiReader.o
   9 UTILS=          bamtools_fasta.o \
  10                 bamtools_options.o \
  11                 bamtools_pileup.o \
  12                 bamtools_utilities.o
  13 TOOLKIT=        bamtools_convert.o \
  14                 bamtools_count.o \
  15                 bamtools_coverage.o \
  16                 bamtools_filter.o \
  17                 bamtools_header.o \
  18                 bamtools_index.o \
  19                 bamtools_merge.o \
  20                 bamtools_random.o \
  21                 bamtools_sam.o \
  22                 bamtools_sort.o \
  23                 bamtools_stats.o
  24 MAIN=           bamtools.o
  25 OBJS=           $(API) $(UTILS) $(TOOLKIT) $(MAIN)
  26 LIBS=           -lz
  27 \r
  28 all: $(PROG)\r
  29 \r
  30 bamtools: $(OBJS)\r
  31         $(CXX) $(CXXFLAGS) -o $@ $(OBJS) $(LIBS)
  32 \r
  33 clean:\r
  34         rm -fr gmon.out *.o *.a a.out *~\r