From: Petr Danecek <pd3@sanger.ac.uk>
Date: Thu, 22 Nov 2012 09:58:39 +0000 (+0000)
Subject: bamcheck: Fixed a bug introduced by previous change igcd to uint: not a good idea... 
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=2bc11e59af52ce87625f9314ce5c70b2a5e2cd5a

bamcheck: Fixed a bug introduced by previous change igcd to uint: not a good idea to init with -1.
---

diff --git a/misc/bamcheck.c b/misc/bamcheck.c
index d72e800..a3f1ac5 100644
--- a/misc/bamcheck.c
+++ b/misc/bamcheck.c
@@ -1322,7 +1322,8 @@ int main(int argc, char *argv[])
     stats->gcd_bin_size = 20e3;
     stats->gcd_ref_size = 4.2e9;
     stats->rseq_pos     = -1;
-    stats->tid = stats->gcd_pos = stats->igcd = -1;
+    stats->tid = stats->gcd_pos = -1;
+    stats->igcd = 0;
     stats->is_sorted = 1;
     stats->cov_min  = 1;
     stats->cov_max  = 1000;