git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	Sarah Westcott <mothur.westcott@gmail.com>
	Tue, 25 Mar 2014 12:30:35 +0000 (08:30 -0400)
committer	Sarah Westcott <mothur.westcott@gmail.com>
	Tue, 25 Mar 2014 12:30:35 +0000 (08:30 -0400)
commit	60928795782d8f8648ec373d6a96b53032a77429
tree	bad8f5fad2f578f3f11e2f610a0a62ed88043254	tree \| snapshot
parent	cbbf2f185fc7289910bb69421095c1de024c5225	commit \| diff

added mothurgetpid function. fixed bug with align.seqs related to g++ 4.8 change. fixed bug in rarefaction.single with shared command if shared file not created by mothur labels not in right order in *.groups.rarefaction. summary.shared sub ample bug, not subampleing. added rjsd and jsd to tree.shared. working on sra command. chimera.slayer blast error bug on linux related to getpid().

55 files changed:

aligncommand.cpp		diff \| blob \| history
aligncommand.h		diff \| blob \| history
bellerophon.cpp		diff \| blob \| history
blastdb.cpp		diff \| blob \| history
chimeraccodecommand.cpp		diff \| blob \| history
chimeracheckcommand.cpp		diff \| blob \| history
chimeraperseuscommand.cpp		diff \| blob \| history
chimerapintailcommand.cpp		diff \| blob \| history
chimeraslayercommand.cpp		diff \| blob \| history
chimerauchimecommand.cpp		diff \| blob \| history
chopseqscommand.cpp		diff \| blob \| history
classifyseqscommand.cpp		diff \| blob \| history
clustersplitcommand.cpp		diff \| blob \| history
consensusseqscommand.h		diff \| blob \| history
countseqscommand.cpp		diff \| blob \| history
createdatabasecommand.cpp		diff \| blob \| history
deconvolutecommand.cpp		diff \| blob \| history
distancecommand.cpp		diff \| blob \| history
filterseqscommand.cpp		diff \| blob \| history
getmetacommunitycommand.cpp		diff \| blob \| history
indicatorcommand.cpp		diff \| blob \| history
makecontigscommand.cpp		diff \| blob \| history
matrixoutputcommand.cpp		diff \| blob \| history
mergesfffilecommand.cpp		diff \| blob \| history
mothurout.cpp		diff \| blob \| history
mothurout.h		diff \| blob \| history
myseqdist.cpp		diff \| blob \| history
pairwiseseqscommand.cpp		diff \| blob \| history
parsimony.cpp		diff \| blob \| history
phylodiversitycommand.cpp		diff \| blob \| history
pintail.cpp		diff \| blob \| history
prcseqscommand.cpp		diff \| blob \| history
preclustercommand.cpp		diff \| blob \| history
primerdesigncommand.cpp		diff \| blob \| history
rarefact.cpp		diff \| blob \| history
rarefactcommand.cpp		diff \| blob \| history
screenseqscommand.cpp		diff \| blob \| history
seqerrorcommand.cpp		diff \| blob \| history
seqsummarycommand.cpp		diff \| blob \| history
sffmultiplecommand.cpp		diff \| blob \| history
shhhercommand.cpp		diff \| blob \| history
shhhseqscommand.cpp		diff \| blob \| history
sparcccommand.cpp		diff \| blob \| history
sracommand.cpp		diff \| blob \| history
sracommand.h		diff \| blob \| history
summaryqualcommand.cpp		diff \| blob \| history
summarysharedcommand.cpp		diff \| blob \| history
treegroupscommand.cpp		diff \| blob \| history
treegroupscommand.h		diff \| blob \| history
trimflowscommand.cpp		diff \| blob \| history
trimseqscommand.cpp		diff \| blob \| history
unifracweightedcommand.cpp		diff \| blob \| history
unweighted.cpp		diff \| blob \| history
validcalculator.cpp		diff \| blob \| history
weighted.cpp		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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