USEMPI ?= no
64BIT_VERSION ?= yes
USEREADLINE ?= yes
-CYGWIN_BUILD ?= no
USECOMPRESSION ?= no
MOTHUR_FILES="\"Enter_your_default_path_here\""
-RELEASE_DATE = "\"1/9/2012\""
-VERSION = "\"1.23.0\""
+RELEASE_DATE = "\"2/12/2014\""
+VERSION = "\"1.33.0\""
FORTAN_COMPILER = gfortran
+FORTRAN_FLAGS =
# Optimize to level 3:
CXXFLAGS += -O3
#TARGET_ARCH += -m64 -static
#if you are a linux user use the following line
- #CXXFLAGS += -mtune=native -march=native -m64
+ #CXXFLAGS += -mtune=native -march=native
- CXXFLAGS += -DBIT_VERSION
+ CXXFLAGS += -DBIT_VERSION
endif
CXXFLAGS += -DMOTHUR_FILES=${MOTHUR_FILES}
endif
-ifeq ($(strip $(CYGWIN_BUILD)),yes)
- CXXFLAGS += -mno-cygwin
- LDFLAGS += -mno-cygwin
-endif
# if you do not want to use the readline library, set this to no.
# make sure you have the library installed
$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
strip mothur
-
+
uchime:
cd uchime_src && ./mk && mv uchime .. && cd ..
fortranSource:
- ${FORTAN_COMPILER} -c *.f
+ ${FORTAN_COMPILER} -c $(FORTRAN_FLAGS) *.f
install : mothur
# cp mothur ../Release/mothur