From 9e9c2a1c2e56f8a0b38e274411d76c89478bef42 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Thu, 24 Oct 2013 09:25:12 +0000 Subject: [PATCH] fixed Seq object creation in sff.rb git-svn-id: http://biopieces.googlecode.com/svn/trunk@2247 74ccb610-7750-0410-82ae-013aeee3265d --- code_ruby/lib/maasha/sff.rb | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/code_ruby/lib/maasha/sff.rb b/code_ruby/lib/maasha/sff.rb index 6b277e3..cabedf6 100644 --- a/code_ruby/lib/maasha/sff.rb +++ b/code_ruby/lib/maasha/sff.rb @@ -219,7 +219,11 @@ class Read # Method that converts a Read object's data to a Seq object. def to_seq - Seq.new(self.name, self.bases, nil, self.quality_scores.map { |i| (i += Seq::SCORE_BASE).chr }.join("") ) + Seq.new( + seq_name: self.name, + seq: self.bases, + qual: self.quality_scores.map { |i| (i += Seq::SCORE_BASE).chr }.join("") + ) end # Method that soft masks the sequence (i.e. lowercases sequence) according to -- 2.39.2