From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 18 Mar 2014 16:21:16 +0000 (+0000)
Subject: polish of fastq
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=eb99c8692714ae906908545a7ff8f59f0d9575e9

polish of fastq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2293 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/fastq.rb b/code_ruby/lib/maasha/fastq.rb
index 4ac44aa..8789899 100644
--- a/code_ruby/lib/maasha/fastq.rb
+++ b/code_ruby/lib/maasha/fastq.rb
@@ -33,22 +33,20 @@ class Fastq < Filesys
   # Method to get the next FASTQ entry from an ios and return this
   # as a Seq object. If no entry is found or eof then nil is returned.
   def get_entry
-    begin
-      seq_name       = @io.gets.chomp!
-      seq            = @io.gets.chomp!
-      @io.gets
-      qual           = @io.gets.chomp!
-
-      entry          = Seq.new
-      entry.seq      = seq
-      entry.seq_name = seq_name[1 .. seq_name.length]
-      entry.qual     = qual
-      entry.type     = nil
-
-      entry
-    rescue
-      nil
-    end
+    seq_name       = @io.gets.chomp!
+    seq            = @io.gets.chomp!
+    @io.gets
+    qual           = @io.gets.chomp!
+
+    entry          = Seq.new
+    entry.seq      = seq
+    entry.seq_name = seq_name[1 .. seq_name.length]
+    entry.qual     = qual
+    entry.type     = nil
+
+    entry
+  rescue
+    nil
   end
 end