From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Fri, 25 Oct 2013 10:29:33 +0000 (+0000)
Subject: fixed analyze_vals issue
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=59c0c522f4a4452b0951f33794dc797c4bcaecfe

fixed analyze_vals issue

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2251 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index 6e0ba0a..cc6269f 100755
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -23,13 +23,28 @@ require 'tmpdir'
 require 'base64'
 require 'erb'
 
+class Numeric
+  def commify
+    self.to_s.gsub(/(^[-+]?\d+?(?=(?>(?:\d{3})+)(?!\d))|\G\d{3}(?=\d))/, '\1,')
+  end
+end
+
 def parse_analysis(file)
   data = {}
 
   File.open(file, 'r') do |ios|
     ios.each do |line|
-      key, val = line.chomp.split(' ')
-      data[key] = val.reverse.gsub(/(\d{3})(?=\d)/, '\\1,').reverse
+      key, val = line.chomp.split(': ')
+        begin Integer(val)
+          val = val.to_i.commify
+        rescue
+          begin Float(val)
+            val = val.to_f.commify
+          rescue
+          end
+        end
+
+      data[key] = val
     end
   end