From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 7 Oct 2013 14:23:35 +0000 (+0000)
Subject: gzip fiddling
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=0947b49340ee1a3618b1791a8f3a68fc6d354e19

gzip fiddling

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2226 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/filesys.rb b/code_ruby/lib/maasha/filesys.rb
index 81190f5..eadb536 100644
--- a/code_ruby/lib/maasha/filesys.rb
+++ b/code_ruby/lib/maasha/filesys.rb
@@ -65,7 +65,7 @@ class Filesys
         case `file -L #{file}`
         when /gzip/
           # ios = Zlib::GzipReader.new File.open(file, mode, options)
-          ios = IO.popen("zcat #{file}")
+          ios = IO.popen("gzip -cd #{file}")
         when /bzip/
           # ios = Bzip2::Reader.new File.open(file, mode, options)   # TODO this method is buggy, investigate
           ios = IO.popen("bzcat #{file}")