fixed Seq object creation in sff.rb

[biopieces.git] / code_ruby / lib / maasha / sff.rb

diff --git a/code_ruby/lib/maasha/sff.rb b/code_ruby/lib/maasha/sff.rb
index 6b277e39b9c9b0e602c08ec386e56968e64df613..cabedf6df8ef26b81899ca36f88cd01eb758c0ba 100644 (file)
--- a/code_ruby/lib/maasha/sff.rb
+++ b/code_ruby/lib/maasha/sff.rb
@@ -219,7 +219,11 @@ class Read
 
   # Method that converts a Read object's data to a Seq object.
   def to_seq
-    Seq.new(self.name, self.bases, nil, self.quality_scores.map { |i| (i += Seq::SCORE_BASE).chr }.join("") )
+    Seq.new(
+      seq_name: self.name,
+      seq: self.bases, 
+      qual: self.quality_scores.map { |i| (i += Seq::SCORE_BASE).chr }.join("")
+    )
   end
 
   # Method that soft masks the sequence (i.e. lowercases sequence) according to