added support for gzip/bzip2 in write_fasta_files (and wrap)

[biopieces.git] / bp_test / test / test_write_fasta_files

diff --git a/bp_test/test/test_write_fasta_files b/bp_test/test/test_write_fasta_files
index d87fb8a5dd71477f1b60bd87234532a1ac0fac84..9332864ba2ec84ac3e61baa39c96c6f430085ae7 100755 (executable)
--- a/bp_test/test/test_write_fasta_files
+++ b/bp_test/test/test_write_fasta_files
@@ -3,16 +3,33 @@
 source "$BP_DIR/bp_test/lib/test.sh"
 
 mkdir $tmp_dir
-
 run "$bp -I $in -d $tmp_dir -k SEQ_NAME -x"
 assert_no_diff_dir $tmp_dir $out.1
 clean
+rm -rf $tmp_dir
 
+mkdir $tmp_dir
+run "$bp -I $in -d $tmp_dir -k SEQ_LEN -x"
+assert_no_diff_dir $tmp_dir $out.2
+clean
 rm -rf $tmp_dir
+
 mkdir $tmp_dir
+run "$bp -I $in -d $tmp_dir -k SEQ_LEN -Z gzip -x"
+gunzip $tmp_dir/*.gz
+assert_no_diff_dir $tmp_dir $out.2
+clean
+rm -rf $tmp_dir
 
-run "$bp -I $in -d $tmp_dir -k SEQ_LEN -x"
+mkdir $tmp_dir
+run "$bp -I $in -d $tmp_dir -k SEQ_LEN -Z bzip2 -x"
+bunzip2 $tmp_dir/*.bz2
 assert_no_diff_dir $tmp_dir $out.2
 clean
+rm -rf $tmp_dir
 
+mkdir $tmp_dir
+run "$bp -I $in -d $tmp_dir -k SEQ_LEN -w 4 -x"
+assert_no_diff_dir $tmp_dir $out.3
+clean
 rm -rf $tmp_dir