adding bzip2 support in ruby

[biopieces.git] / bp_bin / uchime_seq

diff --git a/bp_bin/uchime_seq b/bp_bin/uchime_seq
index 050491899d724da002803d6e829a897460934098..8843274cdfe62864ccff10ed6d75efa0458e95bb 100755 (executable)
--- a/bp_bin/uchime_seq
+++ b/bp_bin/uchime_seq
@@ -43,7 +43,7 @@ tmpfile = File.join(tmpdir, "tmp.stream")
 outfile = File.join(tmpdir, "out.uc")
 
 Biopieces.open(options[:stream_in], tmpfile) do |input, output|
-  Fasta.open(infile, mode="w") do |fasta_io|
+  Fasta.open(infile, "w") do |fasta_io|
     input.each_record do |record|
       output.puts record