adding bzip2 support in ruby

[biopieces.git] / bp_bin / read_sff

diff --git a/bp_bin/read_sff b/bp_bin/read_sff
index cd9d58a88ab872630b5055ca5910c9ce7a2c5c32..1410af6cddf34d225f99ba0bd3a25cb85d085568 100755 (executable)
--- a/bp_bin/read_sff
+++ b/bp_bin/read_sff
@@ -49,7 +49,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
 
   if options[:data_in]
     options[:data_in].each do |file|
-      SFF.open(file, mode='r') do |sff|
+      SFF.open(file, 'r') do |sff|
         sff.each do |entry|
           entry.mask if options[:mask]
           entry.clip if options[:clip]