adding bzip2 support in ruby

[biopieces.git] / bp_bin / read_fasta

diff --git a/bp_bin/read_fasta b/bp_bin/read_fasta
index 8bc5874f55dc0a6399e78c6a29167af9fdb773c1..e6494405f4ae7ebd844cebdebf67e495b036acfc 100755 (executable)
--- a/bp_bin/read_fasta
+++ b/bp_bin/read_fasta
@@ -49,7 +49,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
 
   if options[:data_in]
     options[:data_in].each do |file|
-      Fasta.open(file, mode='r') do |fasta|
+      Fasta.open(file, 'r') do |fasta|
         fasta.each do |entry|
           output.puts entry.to_bp
           num += 1