adding bzip2 support in ruby

[biopieces.git] / bp_bin / create_bowtie2_index

diff --git a/bp_bin/create_bowtie2_index b/bp_bin/create_bowtie2_index
index bce4f88d4b3bec2f67f026df71f3be75c1eff8f6..73545eb3bcdf44e2db640bc159817b6aabfe3b78 100755 (executable)
--- a/bp_bin/create_bowtie2_index
+++ b/bp_bin/create_bowtie2_index
@@ -46,7 +46,7 @@ tmpdir  = Biopieces.mktmpdir
 tmpfile = File.join(tmpdir, "tmp.fna")
 
 Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
-  Fasta.open(tmpfile, mode="w") do |fasta_io|
+  Fasta.open(tmpfile, "w") do |fasta_io|
     input.each_record do |record|
       output.puts record unless options[:no_stream]