adding bzip2 support in ruby

[biopieces.git] / bp_bin / assemble_seq_idba

diff --git a/bp_bin/assemble_seq_idba b/bp_bin/assemble_seq_idba
index e600c0392143a9d8fe4df10ac72df00aa0f8f3aa..87b81a2675769dfa0dc411a48bea9d4303df3383 100755 (executable)
--- a/bp_bin/assemble_seq_idba
+++ b/bp_bin/assemble_seq_idba
@@ -83,7 +83,7 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
 
     file_contig = File.join(options[:directory], "IDBA-UD", "contig.fa")
 
-               Fasta.open(file_contig, mode="r") do |fasta_io|
+               Fasta.open(file_contig, "r") do |fasta_io|
                        fasta_io.each do |entry|
                                output.puts entry.to_bp
                        end