adding bzip2 support in ruby

[biopieces.git] / bp_bin / analyze_assembly

diff --git a/bp_bin/analyze_assembly b/bp_bin/analyze_assembly
index a9a6d12960fa9d743f784451a7a61d3749be4406..614a9e54d8e85bc00e84e2a6deab96049c0ddb5d 100755 (executable)
--- a/bp_bin/analyze_assembly
+++ b/bp_bin/analyze_assembly
@@ -50,7 +50,7 @@ tmpdir  = Biopieces.mktmpdir
 infile  = File.join(tmpdir, "in.fna")
 outfile = File.join(tmpdir, "out.prodigal")
 
-Fasta.open(infile, mode="w") do |fasta_output|
+Fasta.open(infile, "w") do |fasta_output|
   Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
     input.each_record do |record|
       if record[:SEQ]