git.donarmstrong.com Git - bamtools.git/commit

]> git.donarmstrong.com Git - bamtools.git/commit

author	derek <derekwbarnett@gmail.com>
	Mon, 10 Oct 2011 22:29:53 +0000 (18:29 -0400)
committer	derek <derekwbarnett@gmail.com>
	Mon, 10 Oct 2011 22:29:53 +0000 (18:29 -0400)
commit	9f1ce8c47aeadb6dc1320b52ee671c3341b97935
tree	37dc2840db2edca766b750450e33b2a9fb86870e	tree \| snapshot
parent	25a2a1f6598b6452455da96c28a7f58fd9e7ed2d	commit \| diff

Cleaned up intra-API includes & moved version numbers to 2.0.0

75 files changed:

CMakeLists.txt		diff \| blob \| history
src/api/BamAlgorithms.h		diff \| blob \| history
src/api/BamAlignment.cpp		diff \| blob \| history
src/api/BamAlignment.h		diff \| blob \| history
src/api/BamAux.h		diff \| blob \| history
src/api/BamConstants.h		diff \| blob \| history
src/api/BamIndex.h		diff \| blob \| history
src/api/BamMultiReader.cpp		diff \| blob \| history
src/api/BamMultiReader.h		diff \| blob \| history
src/api/BamReader.cpp		diff \| blob \| history
src/api/BamReader.h		diff \| blob \| history
src/api/BamWriter.cpp		diff \| blob \| history
src/api/BamWriter.h		diff \| blob \| history
src/api/CMakeLists.txt		diff \| blob \| history
src/api/IBamIODevice.h		diff \| blob \| history
src/api/SamConstants.h		diff \| blob \| history
src/api/SamHeader.cpp		diff \| blob \| history
src/api/SamHeader.h		diff \| blob \| history
src/api/SamProgram.cpp		diff \| blob \| history
src/api/SamProgramChain.cpp		diff \| blob \| history
src/api/SamProgramChain.h		diff \| blob \| history
src/api/SamReadGroup.cpp		diff \| blob \| history
src/api/SamReadGroupDictionary.cpp		diff \| blob \| history
src/api/SamReadGroupDictionary.h		diff \| blob \| history
src/api/SamSequence.cpp		diff \| blob \| history
src/api/SamSequence.h		diff \| blob \| history
src/api/algorithms/Sort.h		diff \| blob \| history
src/api/internal/BamDeviceFactory_p.cpp		diff \| blob \| history
src/api/internal/BamDeviceFactory_p.h		diff \| blob \| history
src/api/internal/BamException_p.cpp		diff \| blob \| history
src/api/internal/BamFile_p.cpp		diff \| blob \| history
src/api/internal/BamFile_p.h		diff \| blob \| history
src/api/internal/BamFtp_p.cpp		diff \| blob \| history
src/api/internal/BamFtp_p.h		diff \| blob \| history
src/api/internal/BamHeader_p.cpp		diff \| blob \| history
src/api/internal/BamHeader_p.h		diff \| blob \| history
src/api/internal/BamHttp_p.cpp		diff \| blob \| history
src/api/internal/BamHttp_p.h		diff \| blob \| history
src/api/internal/BamIndexFactory_p.cpp		diff \| blob \| history
src/api/internal/BamIndexFactory_p.h		diff \| blob \| history
src/api/internal/BamMultiMerger_p.h		diff \| blob \| history
src/api/internal/BamMultiReader_p.cpp		diff \| blob \| history
src/api/internal/BamMultiReader_p.h		diff \| blob \| history
src/api/internal/BamPipe_p.cpp		diff \| blob \| history
src/api/internal/BamPipe_p.h		diff \| blob \| history
src/api/internal/BamRandomAccessController_p.cpp		diff \| blob \| history
src/api/internal/BamRandomAccessController_p.h		diff \| blob \| history
src/api/internal/BamReader_p.cpp		diff \| blob \| history
src/api/internal/BamReader_p.h		diff \| blob \| history
src/api/internal/BamStandardIndex_p.cpp		diff \| blob \| history
src/api/internal/BamStandardIndex_p.h		diff \| blob \| history
src/api/internal/BamToolsIndex_p.cpp		diff \| blob \| history
src/api/internal/BamToolsIndex_p.h		diff \| blob \| history
src/api/internal/BamWriter_p.cpp		diff \| blob \| history
src/api/internal/BamWriter_p.h		diff \| blob \| history
src/api/internal/BgzfStream_p.cpp		diff \| blob \| history
src/api/internal/BgzfStream_p.h		diff \| blob \| history
src/api/internal/ILocalIODevice_p.cpp		diff \| blob \| history
src/api/internal/ILocalIODevice_p.h		diff \| blob \| history
src/api/internal/SamFormatParser_p.cpp		diff \| blob \| history
src/api/internal/SamFormatPrinter_p.cpp		diff \| blob \| history
src/api/internal/SamHeaderValidator_p.cpp		diff \| blob \| history
src/api/internal/SamHeaderVersion_p.h		diff \| blob \| history
src/toolkit/CMakeLists.txt		diff \| blob \| history
src/utils/CMakeLists.txt		diff \| blob \| history
src/utils/bamtools_fasta.cpp		diff \| blob \| history
src/utils/bamtools_fasta.h		diff \| blob \| history
src/utils/bamtools_filter_engine.h		diff \| blob \| history
src/utils/bamtools_filter_properties.h		diff \| blob \| history
src/utils/bamtools_filter_ruleparser.h		diff \| blob \| history
src/utils/bamtools_options.cpp		diff \| blob \| history
src/utils/bamtools_options.h		diff \| blob \| history
src/utils/bamtools_pileup_engine.cpp		diff \| blob \| history
src/utils/bamtools_pileup_engine.h		diff \| blob \| history
src/utils/bamtools_variant.h		diff \| blob \| history

Branch of bamtools which has rudimentary Debian packaging

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