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2010-10-21	Erik Garrison	add index caching mode setter to BamMultiReader	commit \| commitdiff \| tree
2010-09-29	Erik Garrison	convert: cleanup of prior fix, report if no index file...	commit \| commitdiff \| tree
2010-09-29	Erik Garrison	prior commit caused bug with convert	commit \| commitdiff \| tree
2010-09-28	Erik Garrison	exposes cigar string data to bamtools filter	commit \| commitdiff \| tree
2010-09-28	Erik Garrison	added reader.Open checks to a number of tools	commit \| commitdiff \| tree
2010-09-28	Erik Garrison	Merge branch 'master' of http://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-09-23	Erik Garrison	Merge branch 'master' of http://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-09-20	Erik Garrison	Merge branch 'master' of http://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-09-18	Erik Garrison	Merge branch 'master' of http://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-09-17	Erik Garrison	Merge branch 'master' of http://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-09-13	Erik Garrison	Merge branch 'master' of http://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-09-11	Erik Garrison	updated debugging output in BamIndex, seek vs. calculate...	commit \| commitdiff \| tree
2010-09-11	Erik Garrison	Added more verbose debugging output to BamMultiReader...	commit \| commitdiff \| tree
2010-09-08	Erik Garrison	prefer bamtools index in BamMultiReader	commit \| commitdiff \| tree
2010-09-08	Erik Garrison	Merge branch 'master' of git://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-08-20	Erik Garrison	change printf's to fprint(stderr,	commit \| commitdiff \| tree
2010-08-05	Erik Garrison	for json output in bamtools convert	commit \| commitdiff \| tree
2010-07-07	Erik Garrison	Merge BamMultiReader and SetRegion into bamtools convert	commit \| commitdiff \| tree
2010-07-07	Erik Garrison	Remove heavy-handed failure mode in BamMultiReader...	commit \| commitdiff \| tree
2010-06-21	Erik Garrison	Gracefully handle empty files with the BamMultiReader	commit \| commitdiff \| tree
2010-06-18	Erik Garrison	integration of SetRegion into BamMultiReader	commit \| commitdiff \| tree
2010-06-18	Erik Garrison	moved bamtools_count to use BamRegion	commit \| commitdiff \| tree
2010-06-10	Erik Garrison	change merger to use GetNextAlignmentCore	commit \| commitdiff \| tree
2010-06-10	Erik Garrison	Merge branch 'master' of git://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-06-09	Erik Garrison	further cleanup of duplicate @RG tag warning reporting	commit \| commitdiff \| tree
2010-06-09	Erik Garrison	added warning for duplicate @RG tag in header	commit \| commitdiff \| tree
2010-06-09	Erik Garrison	fixed potential bug with previous commit	commit \| commitdiff \| tree
2010-06-09	Erik Garrison	fixed bug with @RG handling	commit \| commitdiff \| tree
2010-06-09	Erik Garrison	Merge branch 'master' of git://github.com/pezmaster31...	commit \| commitdiff \| tree
2010-06-08	Erik Garrison	BamMultiReader data structure rewrite	commit \| commitdiff \| tree
2010-06-08	Erik Garrison	json output	commit \| commitdiff \| tree
2010-06-07	Erik Garrison	pass ostream variable to print functions in convert	commit \| commitdiff \| tree
2010-05-21	Erik Garrison	Complete prior commit	commit \| commitdiff \| tree
2010-05-21	Erik Garrison	bamtools executable	commit \| commitdiff \| tree

Branch of bamtools which has rudimentary Debian packaging

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