From f3f36d07ad46e302dd772121dd644dc408aebb88 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@live.co.uk>
Date: Tue, 21 Apr 2009 22:17:39 +0000
Subject: [PATCH]  * samtools-0.1.3-1  * fixed a bug in pileup: the first read
 in a chromosome may not be printed

---
 bam_pileup.c | 2 +-
 bamtk.c      | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/bam_pileup.c b/bam_pileup.c
index 6a57831..02bdfd0 100644
--- a/bam_pileup.c
+++ b/bam_pileup.c
@@ -169,7 +169,7 @@ int bam_plbuf_push(const bam1_t *b, bam_plbuf_t *buf)
 			abort();
 		}
 		buf->max_tid = b->core.tid; buf->max_pos = buf->tail->beg;
-		if (buf->tail->end > buf->pos) {
+		if (buf->tail->end > buf->pos || buf->tail->b.core.tid > buf->tid) {
 			buf->tail->next = mp_alloc(buf->mp);
 			buf->tail = buf->tail->next;
 		}
diff --git a/bamtk.c b/bamtk.c
index 67dec9e..a19abc4 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -3,7 +3,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.3"
+#define PACKAGE_VERSION "0.1.3-1"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
-- 
2.39.2