From afb13a370b1f7876c2820258345915f4b63467c8 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Wed, 16 Mar 2011 17:59:01 +0000
Subject: [PATCH] fixed the bug that caused mothur to choke on other commands
 after running catchall with a shared file

---
 catchallcommand.cpp | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/catchallcommand.cpp b/catchallcommand.cpp
index b0ab7c8..66fbf9a 100644
--- a/catchallcommand.cpp
+++ b/catchallcommand.cpp
@@ -382,6 +382,8 @@ int CatchAllCommand::execute() {
 			}
 			string summaryfilename = combineSummmary(sumNames);
 			outputNames.push_back(summaryfilename); outputTypes["summary"].push_back(summaryfilename);
+			
+			globaldata->setSharedFile(sharedfile); globaldata->setFormat("sharedfile");
 		}
 		
 		m->mothurOutEndLine();
-- 
2.39.2