From 40b3324ee4fcb80efb3459e78efbc3140d5e739a Mon Sep 17 00:00:00 2001 From: Kathryn Iverson Date: Wed, 16 May 2012 13:54:52 -0400 Subject: [PATCH] updated output to include standard deviation --- cooccurrencecommand.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/cooccurrencecommand.cpp b/cooccurrencecommand.cpp index 6363f2a..aa553b4 100644 --- a/cooccurrencecommand.cpp +++ b/cooccurrencecommand.cpp @@ -180,7 +180,7 @@ int CooccurrenceCommand::execute(){ m->openOutputFile(outputFileName, out); outputNames.push_back(outputFileName); outputTypes["summary"].push_back(outputFileName); out.setf(ios::fixed, ios::floatfield); out.setf(ios::showpoint); - out << "metric\tlabel\tScore\tzScore\n"; + out << "metric\tlabel\tScore\tzScore\tstandardDeviation\n"; //as long as you are not at the end of the file or done wih the lines you want while((lookup[0] != NULL) && ((allLines == 1) || (userLabels.size() != 0))) { @@ -543,7 +543,7 @@ int CooccurrenceCommand::getCooccurrence(vector& thisLookUp m->mothurOut("zscore: " + toString(zscore)); m->mothurOutEndLine(); m->mothurOut("standard deviation: " + toString(sd)); m->mothurOutEndLine(); - out << metric << '\t' << thisLookUp[0]->getLabel() << '\t' << nullMean << '\t' << zscore << endl; + out << metric << '\t' << thisLookUp[0]->getLabel() << '\t' << nullMean << '\t' << zscore '\t' << sd << endl; return 0; } -- 2.39.2