From 181c7c1165d171e0de9858d76aff23617a83044f Mon Sep 17 00:00:00 2001
From: peterjc
Date: Fri, 23 Mar 2012 13:04:05 +0000
Subject: [PATCH] Add TODO note about reference lengths
---
padding.c | 1 +
1 file changed, 1 insertion(+)
diff --git a/padding.c b/padding.c
index b330326..8d0df07 100644
--- a/padding.c
+++ b/padding.c
@@ -61,6 +61,7 @@ int bam_pad2unpad(bamFile in, bamFile out)
int n2 = 0, m2 = 0, *posmap = 0;
h = bam_header_read(in);
+ /* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */
bam_header_write(out, h);
b = bam_init1();
r.l = r.m = q.l = q.m = 0; r.s = q.s = 0;
--
2.39.2