]> git.donarmstrong.com Git - biopieces.git/history - code_perl
added amiguity.rb
[biopieces.git] / code_perl /
2009-11-25 martinahansenfixed KISS browser genome selection
2009-11-24 martinahansenfixed comma bug
2009-11-24 martinahansenkiss_sort()
2009-11-24 martinahansenfixed KISS
2009-11-24 martinahansenmajor work on KISS browser completed
2009-11-16 martinahansenhacked read_soft to deal with soft_files wo platform...
2009-11-13 martinahansenwrite_kiss now do blast output
2009-11-09 martinahansenfixed SAM bug
2009-11-09 martinahansenimproved SAM parser
2009-11-05 martinahansenfixed KISS align code
2009-11-04 martinahansencorrected ALIGN implementation
2009-11-04 martinahansenfixed details in bowtie_seq
2009-10-30 martinahansenadded read_sam
2009-10-29 martinahansencorrected error message in dir_create
2009-10-28 martinahansenKISS browser working, but slow
2009-10-28 martinahansenadded ALIGN view support to KISS
2009-10-27 martinahansenmore work on KISS
2009-10-27 martinahansenrevised KISS format
2009-10-24 martinahansenadded zoom and move to KISS
2009-10-22 martinahansenKISS upgrade
2009-10-21 martinahansenchanged KISS format
2009-10-21 martinahansenfixed dna/DNA bug in Align.pm
2009-10-19 martinahansenadded XHTML
2009-10-18 martinahansenadded write_gff
2009-09-30 martinahansenfixed bug in get_genome_seq
2009-09-29 martinahansenfixed STRAND in SAM format
2009-09-28 martinahansenadded SAM.pm
2009-09-28 martinahansenadded bwa_seq
2009-09-21 martinahansenadded assemble_contigs
2009-09-21 martinahansencleaned up calc_fixedstep
2009-09-17 martinahansenadded get_seq
2009-09-16 martinahansenfixed match_seq bug
2009-09-09 martinahansenfixed bug in psl2bed conversion
2009-09-09 martinahansenfixed wrap blunder in Fasta.pm
2009-09-09 martinahansenadded BED entry output to check_bed
2009-09-08 martinahansenadded BWA index support
2009-09-08 martinahansenunfucked bowtie_index
2009-09-08 martinahansenfuckup
2009-09-07 martinahansenfixed solexa/phred code
2009-09-04 martinahansendisabled quality score conversion in FASTQ and Solexa
2009-09-02 martinahansenfixed issues in fastq handling
2009-08-28 martinahansenmore work on AlignTwoSeq
2009-08-27 martinahansenworking on AlignTwoSeq
2009-08-20 martinahansenfinished rescan_seq
2009-08-20 martinahansenadded more range to plot_lendist
2009-08-14 martinahansenpolished RestrictEnz.pm
2009-08-14 martinahansenadded RestrictEnz.pm
2009-08-12 martinahansenadded analyze_gc
2009-08-10 martinahansenadded nifty # detail to read_tab
2009-08-10 martinahansenadded --logscale_y switch to relevant plot_* biopieces
2009-08-04 martinahansenadded a skip_scores switch to read_solexa and read_fastq
2009-08-02 martinahansenfix embl parser
2009-08-02 martinahansenfinishing read_embl
2009-08-02 martinahansenadded get_embl_entry
2009-07-29 martinahansenadded embl_index
2009-07-29 martinahansenadded .biopiecesrc
2009-07-28 martinahansenfinished write_mysql
2009-07-28 martinahansenchanged read_solexa
2009-07-28 martinahansenadded quality threshold to read_fastq
2009-07-27 martinahansenadded write_mysql
2009-07-27 martinahansenfixed list_mysql_databases
2009-07-27 martinahansenadded list_mysql_databases
2009-07-24 martinahansenfixed Gwiki colors
2009-07-23 martinahansenfixed bowtie_seq
2009-07-23 martinahansenadded Bowtie.pm
2009-07-23 martinahansenaddid term colors to list_genomes
2009-07-21 martinahansenfixed bowtie_seq
2009-07-20 martinahansenadded bowtie_seq biopiece
2009-07-20 martinahansenadded bowtie to format_genome
2009-07-10 martinahansenspeedup of analyze_seq 3 fold
2009-07-10 martinahansenadded str_analyze to Common.pm
2009-07-08 martinahansenuse warnings added to perl modules
2009-07-07 martinahansenminor changes
2009-06-23 martinahansenfixes and stuff
2009-06-17 martinahansenfixed a number of bugs in PSL
2009-06-16 martinahansenfixed perl5.10 issue for soft parser
2009-06-16 martinahansenfixed bug in time_stamp_diff
2009-06-15 martinahansenadded indel_seq
2009-06-15 martinahansenadded mutate_seq
2009-06-15 martinahansenfixed bug in Fasta.pm
2009-06-08 martinahansenfixed minor bugs
2009-06-06 martinahansenfixed bug in format_genome
2009-06-06 martinahansenfixes but in removal of tmp_dir
2009-06-06 martinahansenfixes done to tmp_dir
2009-06-06 martinahansenfixing status
2009-06-05 martinahansenadded align_pair_seq
2009-06-05 martinahansenmigration done
2009-06-05 martinahansenalmost done
2009-06-05 martinahansenmigrated removers
2009-06-05 martinahansenmigrated upload_to_ucsc
2009-06-04 martinahansenalmost there
2009-06-04 martinahansenfixed a couple of bugs - good
2009-06-02 martinahansenbleh blah
2009-06-02 martinahansenremove bin dir
2009-06-02 martinahansen3 more again
2009-06-02 martinahansen3 more
2009-06-02 martinahansenmore read_ tools migrated
2009-06-02 martinahansenmigrating read_ tools
2009-06-02 martinahansenmigration of all write tools done
2009-06-02 martinahansenmigrated 3 write tools
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