From: Petr Danecek <pd3@sanger.ac.uk>
Date: Fri, 7 May 2010 12:41:56 +0000 (+0000)
Subject: Added a note about the indels coordinates
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=6a90b5051e8de8561a7fece6b1a0c28f5698a06d;p=samtools.git

Added a note about the indels coordinates
---

diff --git a/samtools.1 b/samtools.1
index 31375f3..b028779 100644
--- a/samtools.1
+++ b/samtools.1
@@ -232,6 +232,8 @@ covering reads, the first alllele, the second allele, # reads supporting
 the first allele, # reads supporting the second allele and # reads
 containing indels different from the top two alleles.
 
+The position of indels is offset by -1.
+
 .B OPTIONS:
 .RS