void setFileName(string);
void mothurOut(string); //writes to cout and the logfile
+ void debugOut(string); //writes to cout and the logfile if debugging is on
void mothurOutEndLine(); //writes to cout and the logfile
void mothurOut(string, ofstream&); //writes to the ofstream, cout and the logfile
+ void debugOut(string, ofstream&); //writes to the ofstream, cout and the logfile if debugging is on
void mothurOutEndLine(ofstream&); //writes to the ofstream, cout and the logfile
void mothurOutJustToScreen(string); //writes to cout
void mothurOutJustToLog(string);