fixed constants for align.rb

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2023 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/code_ruby/lib/maasha/align.rb b/code_ruby/lib/maasha/align.rb
index b31154619fc991b4cc7123324e2723be3c349a0d..2b63d91c3593eb93668e47e0f2ff8c0bd8824a24 100755 (executable)
--- a/code_ruby/lib/maasha/align.rb
+++ b/code_ruby/lib/maasha/align.rb
@@ -34,10 +34,10 @@ ALPH_DNA  = %w{A T C G}
 ALPH_AMBI = %w{A T C G M R W S Y K V H D B N}
 
 BIT_INDEL = 0
-# BIT_A = 1 << 0
-# BIT_T = 1 << 1
-# BIT_C = 1 << 2
-# BIT_G = 1 << 3
+BIT_A = 1 << 0
+BIT_T = 1 << 1
+BIT_C = 1 << 2
+BIT_G = 1 << 3
 
 BIT_M = BIT_A | BIT_C
 BIT_R = BIT_A | BIT_G