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(parent: 07ffc48) | patch

author	Daniel Jones <dcjones@cs.washington.edu>
	Tue, 9 Oct 2012 06:20:25 +0000 (23:20 -0700)
committer	Daniel Jones <dcjones@cs.washington.edu>
	Tue, 9 Oct 2012 06:20:25 +0000 (23:20 -0700)
commit	d6b81119e55cf77c1e4c17b9e9026abc01e22b96
tree	6fc428e58034222c8994154fa6cf58d686394121	tree \| snapshot
parent	07ffc4895d705c5207492a002ffce4576dac5fc5	commit \| diff

Much simpler faster code for parsing fastq files.

15 files changed:

Makefile.am		diff \| blob \| history
configure.ac		diff \| blob \| history
src/fastq-grep.c		diff \| blob \| history
src/fastq-kmers.c		diff \| blob \| history
src/fastq-match.c		diff \| blob \| history
src/fastq-qual.c		diff \| blob \| history
src/fastq-qualadj.c		diff \| blob \| history
src/fastq-sample.c		diff \| blob \| history
src/fastq-uniq.c		diff \| blob \| history
src/parse.c		diff \| blob \| history
src/parse.h		diff \| blob \| history
tests/Makefile.am	[new file with mode: 0644]	blob
tests/cat_fastq.c	[new file with mode: 0644]	blob
tests/parse_fastq	[new file with mode: 0755]	blob
tests/random_fastq.c	[new file with mode: 0644]	blob

Fastq configuration