X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sparcccommand.cpp;h=f319c014793560eb2809435a8da9ebf68df97543;hb=HEAD;hp=a7f5d78ad37c4c515821fd4686fb769d74ecd68f;hpb=58e640f9968ed426ac8cc0ebe3c01564ce68b4d7;p=mothur.git

diff --git a/sparcccommand.cpp b/sparcccommand.cpp
index a7f5d78..f319c01 100644
--- a/sparcccommand.cpp
+++ b/sparcccommand.cpp
@@ -317,7 +317,7 @@ int SparccCommand::process(vector<SharedRAbundVector*>& lookup){
         cout.setf(ios::showpoint);
         
         vector<vector<float> > sharedVector;
-        vector<string> otuNames = m->currentBinLabels;
+        vector<string> otuNames = m->currentSharedBinLabels;
         
         //fill sharedVector to pass to CalcSparcc
         for (int i = 0; i < lookup.size(); i++) {
@@ -427,7 +427,7 @@ vector<vector<float> > SparccCommand::createProcesses(vector<vector<float> >& sh
             
 			//loop through and create all the processes you want
 			while (process != processors) {
-				int pid = fork();
+				pid_t pid = fork();
 				
 				if (pid > 0) {
 					processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -437,7 +437,7 @@ vector<vector<float> > SparccCommand::createProcesses(vector<vector<float> >& sh
 					
 					//pass pvalues to parent
 					ofstream out;
-					string tempFile = toString(getpid()) + ".pvalues.temp";
+					string tempFile = m->mothurGetpid(process) + ".pvalues.temp";
 					m->openOutputFile(tempFile, out);
 					
 					//pass values