X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=preclustercommand.cpp;h=bbf8df27ac5ee691f091f150638b781f85486a11;hb=c48d91112209b841444923670dca5454da0e2a4d;hp=c2564c1f769a835fd85559f10811672eb6a34e0d;hpb=2cfb747aa8f63bde9c1114001e6d2e81ccd26178;p=mothur.git

diff --git a/preclustercommand.cpp b/preclustercommand.cpp
index c2564c1..bbf8df2 100644
--- a/preclustercommand.cpp
+++ b/preclustercommand.cpp
@@ -597,7 +597,7 @@ int PreClusterCommand::process(string newMapFile){
                     out << "ideal_seq_" << (i+1) << '\t' << alignSeqs[i].numIdentical << endl << chunk << endl;;
                     
                 }//end if active i
-                if(i % 100 == 0)	{ m->mothurOut(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)); m->mothurOutEndLine();	}
+                if(i % 100 == 0)	{ m->mothurOutJustToScreen(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)+"\n"); 	}
             }
         }else {
             map<int, string> mapFile;
@@ -632,7 +632,7 @@ int PreClusterCommand::process(string newMapFile){
                     }//end abundance check
                 }//end for loop j
                 
-                if(i % 100 == 0)	{ m->mothurOut(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)); m->mothurOutEndLine();	}
+                if(i % 100 == 0)	{ m->mothurOutJustToScreen(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)+"\n"); 	}
             }
             
             for (int i = 0; i < numSeqs; i++) {