X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.h;h=0f34d0296020b8a3ebcf457084c10a80e25c27bb;hb=HEAD;hp=1747b1480c732ae42f361940ff57dcbe151bbc7b;hpb=37b23ba7d98eca13d02cde8d3b1ad08ac92fefb9;p=mothur.git

diff --git a/mothurout.h b/mothurout.h
index 1747b14..0f34d02 100644
--- a/mothurout.h
+++ b/mothurout.h
@@ -132,7 +132,7 @@ class MothurOut {
 		//searchs and checks
 		bool checkReleaseVersion(ifstream&, string);
 		bool anyLabelsToProcess(string, set<string>&, string);
-		bool inUsersGroups(vector<string>, vector<string>);
+		bool inUsersGroups(vector<string>, vector<string>); //returns true if any of the strings in first vector are in second vector
         bool inUsersGroups(vector<int>, vector< vector<int> >);
 		bool inUsersGroups(string, vector<string>);
         bool inUsersGroups(int, vector<int>);
@@ -146,6 +146,7 @@ class MothurOut {
         bool isLabelEquivalent(string, string);
         string getSimpleLabel(string);
         string findEdianness();
+        string mothurGetpid(int);
 	
 		
 		//string manipulation
@@ -157,6 +158,7 @@ class MothurOut {
 		void splitAtDash(string&, vector<string>&);
 		void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
+        int removeBlanks(vector<string>&);
         vector<string> splitWhiteSpaceWithQuotes(string);
 		int removeConfidences(string&);
         string removeQuotes(string);
@@ -164,6 +166,7 @@ class MothurOut {
         bool isSubset(vector<string>, vector<string>); //bigSet, subset
         int checkName(string&);
         map<string, vector<string> > parseClasses(string);
+        
 		
 		//math operation
         double max(vector<double>&); //returns largest value in vector