X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2Fbamcheck.c;h=a3f1ac5820175c9ed6b0a9c7112e0bab8caae5d2;hb=2bc11e59af52ce87625f9314ce5c70b2a5e2cd5a;hp=d72e8008d9d1eb84810406a3a7bec15c1b7542a0;hpb=269cdd75ec0b5beab02cc4e985b586f5e4e5ec3f;p=samtools.git

diff --git a/misc/bamcheck.c b/misc/bamcheck.c
index d72e800..a3f1ac5 100644
--- a/misc/bamcheck.c
+++ b/misc/bamcheck.c
@@ -1322,7 +1322,8 @@ int main(int argc, char *argv[])
     stats->gcd_bin_size = 20e3;
     stats->gcd_ref_size = 4.2e9;
     stats->rseq_pos     = -1;
-    stats->tid = stats->gcd_pos = stats->igcd = -1;
+    stats->tid = stats->gcd_pos = -1;
+    stats->igcd = 0;
     stats->is_sorted = 1;
     stats->cov_min  = 1;
     stats->cov_max  = 1000;