X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mergesfffilecommand.cpp;h=a7a9c499259ec8f8adb5d02eb3903754590d7d78;hb=60928795782d8f8648ec373d6a96b53032a77429;hp=f417ddebe1d8f69b073102d375ed8a9c6c2ac25b;hpb=cbbf2f185fc7289910bb69421095c1de024c5225;p=mothur.git

diff --git a/mergesfffilecommand.cpp b/mergesfffilecommand.cpp
index f417dde..a7a9c49 100644
--- a/mergesfffilecommand.cpp
+++ b/mergesfffilecommand.cpp
@@ -220,7 +220,7 @@ int MergeSfffilesCommand::execute(){
 		if (outputDir == "") {  thisOutputDir += m->hasPath(outputFile);  }
         variables["[filename]"] = thisOutputDir + m->getSimpleName(outputFile);
 		outputFile = getOutputFileName("sff",variables);
-        m->openOutputFile(outputFile, out);
+        m->openOutputFileBinary(outputFile, out);
         outputNames.push_back(outputFile); outputTypes["sff"].push_back(outputFile);
         outputFileHeader = outputFile + ".headers";
         numTotalReads = 0;